Batch conversion of partial panos would require knowing either the horizontal or vertical field of views.
If the horizontal fov was the same for all images then conversion could be scripted using the ktransform tool which is part of the krpano package.
If the vertical fov was the same for all images then some other tool in concert with ktransform would be required to read the height and width of the image in pixels and then calculate the horizontal fov of the image based on the width/height ratio and the vertical fov.
Possible tools would be sips (mac only), exiftool (mac and pc) or imagemagick (mac, pc and unix/linux).