Thanx for your answer Sasha, but with my d800 video is 1920x1080 and pictures are 7360 × 4912 wich is not the same size and the same ratio, can't take video with a 3:2 ratio...
What camera do you use to have the same sizes and ratio ?
I think your process could be improved. There should be no reason to have to warp the video in AE.
To simplify things, you can shoot your video at the same time as you shoot your stitch. "You need extra care here because, you can forget to shoot your nadir when you've finished your video"
Then you explode your video into frames.
Use the pixel perfect technique to output a video frame to rectalinear format, and save the template.
BATCH ALL the video frame.
Take all the frames and re-assemble the video.
Now your video should be pixel perfect to the panorama without having to warp anything into place.
Now here's an extra step, If you should brackets/hdr, your video frames will look crappy and off-color, so you can bring a frame and 360 into photoshop and try to match color.
Then you can also bring in a edge overlay and photoshop action that so it'll blend from video frames into your hdr.
Basically the same as you except with photoshop and no hand-warping of the video.
Apologies for starting this thread up again but I was curious to know which software explodes the video to frames?
I've tried VLC via command prompt and some other freebies but no luck. I'm currently downloading the trial version of Adobe Premiere Pro CC to see if that does it.
Thanks